WorkflowsΒΆ
This document explains how to run the different workflows used in our project
Contents:
Contents:
- WGS BAM qc pipeline
- WES BAM qc pipeline
- BCFtools WGS variant filtering pipeline
- BCFtools WES variant filtering pipeline
- Freebayes variant filtering pipeline
- GATK variant filtering pipeline
- VCF decoration
- ML-based workflow to filter a VCF
- Benchmarking with a true set
- Consensus call set generation
- Phasing pipeline
- CRAM to BAM conversion