InstallationΒΆ
Preparing environment
Modify your $PYTHONPATH to include the required libraries:
export PYTHONPATH=${ehive_dir}/wrappers/python3/:$PYTHONPATH
Modify your $PERL5LIB to include the required libraries:
export PERL5LIB=${ehive_dir}/modules/:${igsr_analysis_dir}/:${PERL5LIB}
Modify your $PATH to include the location of the eHive scripts:
export PATH=${ehive_dir}/scripts/:${PATH}
Install dependency
- Clone repo by doing
git clone https://github.com/igsr/igsr_analysis.git
in the desired folder pip install ${igsr_analysis_dir}/dist/igsr_analysis-0.90.tar.gz
And you are ready to go!
Conventions used in this README file:
${igsr_analysis_dir}
is the folder where you have cloned https://github.com/igsr/igsr_analysis.git${ehive_dir}
is the folder where you have cloned https://github.com/Ensembl/ensembl-hive.git