igsr_analysis
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A
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B
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C
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G
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L
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M
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P
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R
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S
A
aggregate_stats() (BamQC.BamQC.BamQC method)
B
BamQC (class in BamQC.BamQC)
BamQC.BamQC (module)
BEDTools (class in BEDTools.BEDTools)
BEDTools.BEDTools (module)
C
calc_ratio() (BamQC.BamQC.Chk_indel method)
Chk_indel (class in BamQC.BamQC)
CMetrics (class in BamQC.BamQC)
create_cov_barplot() (BamQC.BamQC.CMetrics method)
G
get_contigs() (BamQC.BamQC.BamQC method)
get_simple_stats() (BamQC.BamQC.BamQC method)
L
list_of_readgroups() (BamQC.BamQC.BamQC method)
list_of_samples() (BamQC.BamQC.BamQC method)
M
make_windows() (BEDTools.BEDTools.BEDTools method)
P
print_report() (BamQC.BamQC.CMetrics method)
(BamQC.BamQC.SDepth method)
R
run_chk_indel_rg() (BamQC.BamQC.BamQC method)
run_CollectHsMetrics() (BamQC.BamQC.BamQC method)
run_CollectWgsMetrics() (BamQC.BamQC.BamQC method)
run_samtools_depth() (BamQC.BamQC.BamQC method)
run_verifybamid() (BamQC.BamQC.BamQC method)
S
SDepth (class in BamQC.BamQC)
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