Index

A

aggregate_stats() (BamQC.BamQC.BamQC method)

B

BamQC (class in BamQC.BamQC) BamQC.BamQC (module)

BEDTools (class in BEDTools.BEDTools) BEDTools.BEDTools (module)

C

calc_ratio() (BamQC.BamQC.Chk_indel method) Chk_indel (class in BamQC.BamQC)

CMetrics (class in BamQC.BamQC) create_cov_barplot() (BamQC.BamQC.CMetrics method)

G

get_contigs() (BamQC.BamQC.BamQC method)

get_simple_stats() (BamQC.BamQC.BamQC method)

L

list_of_readgroups() (BamQC.BamQC.BamQC method)

list_of_samples() (BamQC.BamQC.BamQC method)

M

make_windows() (BEDTools.BEDTools.BEDTools method)

P

print_report() (BamQC.BamQC.CMetrics method) (BamQC.BamQC.SDepth method)

R

run_chk_indel_rg() (BamQC.BamQC.BamQC method) run_CollectHsMetrics() (BamQC.BamQC.BamQC method)

run_CollectWgsMetrics() (BamQC.BamQC.BamQC method) run_samtools_depth() (BamQC.BamQC.BamQC method) run_verifybamid() (BamQC.BamQC.BamQC method)

S

SDepth (class in BamQC.BamQC)